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| title | Using devtools to install ConceptLibraryClient from Github |
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|
install.packages("devtools");
library(devtools);
install_github("DSThayer/concept-library-client", subdir="ConceptLibraryClient"); |
Internal: the package is available with other packages we have developed for SAIL users, in R:/r_packages/ConceptLibraryClient. Please run the install.r script to install the package and dependencies.
Getting concepts into data frames
The basic process is:
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library(ConceptLibraryClient);
#Retrieve the latest version of a concept. You will be prompted for a username and password
copd_icd10 = ConceptLibraryClient::get_concept_codes(
url='https://conceptlibrary.saildatabank.com',
id=141
);
#View the retrieved data frame
copd_icd10;
#Set your credentials so you don't have to log in for each command.
credentials = create_auth();
#Get a concept, explicitly specifying a particular version.
copd_icd10_20200602 = get_concept_codes(
url='https://conceptlibrary.saildatabank.com',
id=141,
version=392,
auth=credentials #Supply username and password
);
#Retrieve multiple concepts into a single data frame
comorbidities_primary_care = get_concept_codes(
url='https://conceptlibrary.saildatabank.com',
id=c(140,142,144),
auth=credentials
);
|
